I'm thinking along the same lines as Matt13 based upon what you've posted. I love college baseball and I think it provides a great 2 or 4 year opportunity for many young men to get an education and play baseball. However, I'd be focused on year 3 or 5....your professional career (whatever path you choose) and paying off any financial obligations. Look into your crystal ball and determine what is going to be most important in year 3 or 5 because baseball will most likely be in the rear view mirror. Which ever school matches up best to accomplish your career goals is where I'd strongly consider.
Good luck!